DRR028646_1.fastq FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	DRR028646_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	151425623
Sequences flagged as poor quality	0
Sequence length	151
%GC	40

Per base sequence quality

Per base quality graph

Per tile sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGGA	60475	0.0	16.217909	1
ATCGGAA	65260	0.0	15.299206	2
TCGGAAG	74115	0.0	13.528534	3
CGGAAGA	77725	0.0	12.937528	4
TCGTATG	28055	0.0	7.4493423	40-44
CGTATGC	28240	0.0	7.3492203	40-44
ATGCCGT	30080	0.0	6.8625317	45-49
CTCGTAT	27515	0.0	6.8581095	40-44
TCTCGTA	27575	0.0	6.669742	40-44
TGCCGTC	33265	0.0	6.349276	45-49
TATGCCG	34930	0.0	6.1005774	45-49
GCCGTCT	34770	0.0	6.061944	45-49
CCGTCTT	37065	0.0	5.7807827	50-54
GAGCACA	204925	0.0	5.6154447	9
AATCTCG	34065	0.0	5.4449053	35-39
CGTCTTC	41215	0.0	5.3042283	50-54
GAAGAGC	210960	0.0	5.2627034	6
AGAGCAC	226410	0.0	5.0665784	8