Left reads: Input : 41389339 Mapped : 34026724 (82.2% of input) of these: 2686613 ( 7.9%) have multiple alignments (36674 have >20) Right reads: Input : 41389339 Mapped : 23093994 (55.8% of input) of these: 1420543 ( 6.2%) have multiple alignments (36646 have >20) 69.0% overall read mapping rate. Aligned pairs: 21973621 of these: 1321716 ( 6.0%) have multiple alignments 316281 ( 1.4%) are discordant alignments 52.3% concordant pair alignment rate.