Left reads: Input : 18025823 Mapped : 15672855 (86.9% of input) of these: 655931 ( 4.2%) have multiple alignments (32172 have >20) Right reads: Input : 18025823 Mapped : 15316092 (85.0% of input) of these: 640986 ( 4.2%) have multiple alignments (32175 have >20) 86.0% overall read mapping rate. Aligned pairs: 14841180 of these: 614442 ( 4.1%) have multiple alignments 114478 ( 0.8%) are discordant alignments 81.7% concordant pair alignment rate.